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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147651311_147654200_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147651311 - 147654200
Intron Length:
2890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACATC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTGATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATTGCACTAATA
Flanking Amino Acid:
NKFEGMSQQSSTGTAKTALG
Intron Amino Acid Position:
896

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
78.6
35.9
Major BPS
80
0.75
1
78.6
31
Major PPT
71.4
0.48
1
70
40.6
Minor 5ss
43.3
-0.7
3
60.2
44.5
Minor BPS
49.7
-0
2
67.79
38.5

Associated Gene:

Gene:
ASAP1
Ensembl Gene ID:
ENSAPLG00000005640
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005937
147638863 - 147765767
126905
ENSAPLT00000033809
147638863 - 147784733
145871