About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147657237_147660497_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147657237 - 147660497
Intron Length:
3261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAAAAAA
5'SS Class:
major
3'SS Sequence:
TGTTATCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TGTTTGTTATCT
Flanking Amino Acid:
ILVLPSLSLSGPPSTLPLST
Intron Amino Acid Position:
820

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
72
32.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.6
0.76
0.8
77.5
36.5
Minor 5ss
32.3
-2
3
36.7
41.7
Minor BPS
54.7
0.23
2.3
80.05
42

Associated Gene:

Gene:
ASAP1
Ensembl Gene ID:
ENSAPLG00000005640
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005937
147638863 - 147765767
126905