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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147657237_147665700_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147657237 - 147665700
Intron Length:
8464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTATCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TGTTTGTTATCT
Flanking Amino Acid:
PPLPPRNAGKGPPSTLPLST
Intron Amino Acid Position:
802

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.6
0.76
0.8
77.5
36.5
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
54.7
0.23
2.3
80.05
42

Associated Gene:

Gene:
ASAP1
Ensembl Gene ID:
ENSAPLG00000005640
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033809
147638863 - 147784733
145871