Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147660552_147665700_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

147660552 - 147665700

Intron Length:

5149

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTCTG

5'SS Class:

strong_major

3'SS Sequence:

CCTTCCTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CAATTTTTAATA

Flanking Amino Acid:

PPLPPRNAGKVPVLPLTGIL

Intron Amino Acid Position:

802

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.8

1.06

0.8

81.8

38.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

86.5

0.82

0.7

Minor 5ss

37.8

-1.4

49.5

46.7

Minor BPS

64.4

0.45

1.2

64.37

36.5

Associated Gene:

Gene:

ASAP1

Ensembl Gene ID:

ENSAPLG00000005640

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005937

147638863 - 147765767

126905