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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147670026_147672209_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147670026 - 147672209
Intron Length:
2184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTGATTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATTGTTGATT
Flanking Amino Acid:
LLRGKPTIDVVNQAGETALD
Intron Amino Acid Position:
667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79.9
0.67
0.9
73.2
41.7
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
57.2
0.31
2.1
78.8
37.9

Associated Gene:

Gene:
ASAP1
Ensembl Gene ID:
ENSAPLG00000005640
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033809
147638863 - 147784733
145871
ENSAPLT00000005937
147638863 - 147765767
126905