About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147687315_147687721_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147687315 - 147687721
Intron Length:
407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTCT
5'SS Class:
major
3'SS Sequence:
TGTTCTTACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATGTTCTTACCT
Flanking Amino Acid:
KKGYLLKKSDGLRKVWQRRK
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.1
37.2
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
72.6
0.51
0.9
66.4
39.8
Minor 5ss
48.5
-0.1
2.4
59.5
45
Minor BPS
68.2
0.65
1.6
81.61
40.3

Associated Gene:

Gene:
ASAP1
Ensembl Gene ID:
ENSAPLG00000005640
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033809
147638863 - 147784733
145871
ENSAPLT00000005937
147638863 - 147765767
126905