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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147696588_147697551_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147696588 - 147697551
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATAG
Flanking Amino Acid:
NLIKYYHAQCNFFQDGLKTA
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
100
1.24
0.5
100
0
Major PPT
86.2
0.81
0.7
81.8
28.6
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
56
0.05
2
70.21
42.4

Associated Gene:

Gene:
ASAP1
Ensembl Gene ID:
ENSAPLG00000005640
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033809
147638863 - 147784733
145871
ENSAPLT00000005937
147638863 - 147765767
126905