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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147700290_147704060_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147700290 - 147704060
Intron Length:
3771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
KELSTLLKNLLQGLSHNVIF
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
72.9
31.2
Major BPS
100
1.24
0.5
100
0
Major PPT
91.5
0.93
0.7
89.9
24.7
Minor 5ss
26.8
-2.7
3.3
35
42.5
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
ASAP1
Ensembl Gene ID:
ENSAPLG00000005640
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033809
147638863 - 147784733
145871
ENSAPLT00000005937
147638863 - 147765767
126905