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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14773032_14792542_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14773032 - 14792542
Intron Length:
19511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
TTTTGTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TAAATCATAAGA
Flanking Amino Acid:
GASSAAAMAEINLKFLTWAG
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
71.6
0.54
1
72
33.1
Major PPT
87.9
0.85
0.8
85.7
33.4
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
47.5
-0.2
1.9
59.05
40

Associated Gene:

Gene:
ITGB1
Ensembl Gene ID:
ENSAPLG00000009293
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017287
14772375 - 14816129
43755
ENSAPLT00000009794
14772375 - 14809935
37561
ENSAPLT00000046467
14772375 - 14816129
43755
ENSAPLT00000018684
14772375 - 14815923
43549