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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147875189_147880194_F

Intron Information:

Intron Rank:
136880
Intron Class:
major
Intron Phase:
Intron Coordinates:
147875189 - 147880194
Intron Length:
5006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTCCCTTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.6
33.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
89.8
0.9
0.6
89.3
19.6
Minor 5ss
34.2
-1.8
3.2
47.6
47.9
Minor BPS
73.8
0.83
1.2
84.52
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023718
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027254
147874834 - 147880302
5469