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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147875221_147886902_R

Intron Information:

Intron Rank:
134416
Intron Class:
major
Intron Phase:
Intron Coordinates:
147875221 - 147886902
Intron Length:
11682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTCAA
5'SS Class:
major
3'SS Sequence:
TCTCTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
GTGTTTCCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1
63.9
38
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
83.2
0.75
0.7
77.4
24.6
Minor 5ss
29.4
-2.4
2.8
28.6
37
Minor BPS
42.9
-0.4
2
61
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019580
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039857
147874955 - 147889433
14479
ENSAPLT00000019478
147874955 - 147917272
42318