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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147877019_147880783_R

Intron Information:

Intron Rank:
141702
Intron Class:
major
Intron Phase:
Intron Coordinates:
147877019 - 147880783
Intron Length:
3765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAACA
5'SS Class:
strong_major
3'SS Sequence:
ATCTAATTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTCCCCTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.3
32.4
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
76.3
0.59
0.9
66.4
43.4
Minor 5ss
33.8
-1.8
2.8
42
44.2
Minor BPS
62.4
0.47
2
86.68
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023594
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041951
147875912 - 147880917
5006