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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147887032_147916481_R

Intron Information:

Intron Rank:
134417
Intron Class:
major
Intron Phase:
Intron Coordinates:
147887032 - 147916481
Intron Length:
29450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAATTG
5'SS Class:
major
3'SS Sequence:
CTCCACTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTCTAT
U12 Branch Point Sequence:
TATTTCTCCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
65.8
40.9
Major BPS
65
0.37
1.3
64.5
42.5
Major PPT
74.1
0.54
0.8
67.5
32.1
Minor 5ss
40.5
-1.1
3.2
47.6
47.9
Minor BPS
58.7
0.35
2
81.1
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019580
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019478
147874955 - 147917272
42318