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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14792613_14792847_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14792613 - 14792847
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAT
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TATTCTTTCATA
Flanking Amino Acid:
CLIWSGFGQQAGSDCIKANA
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
80.3
34.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
80.7
0.69
0.8
76.5
31.7
Minor 5ss
35.2
-1.7
3.1
49.5
46.7
Minor BPS
65.8
0.49
1.7
76.04
35.6

Associated Gene:

Gene:
ITGB1
Ensembl Gene ID:
ENSAPLG00000009293
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017287
14772375 - 14816129
43755
ENSAPLT00000009794
14772375 - 14809935
37561
ENSAPLT00000046467
14772375 - 14816129
43755
ENSAPLT00000018684
14772375 - 14815923
43549