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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14794690_14796619_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14794690 - 14796619
Intron Length:
1930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTGAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTTGTTTAATC
Flanking Amino Acid:
PQKLVLKLRVGEPQTVSLKF
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
72.7
38.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
63.4
0.3
1.1
58.7
40.5
Minor 5ss
33
-1.9
3.1
41.9
44.5
Minor BPS
65.8
0.47
1.7
74.58
36.6

Associated Gene:

Gene:
ITGB1
Ensembl Gene ID:
ENSAPLG00000009293
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009794
14772375 - 14809935
37561
ENSAPLT00000018684
14772375 - 14815923
43549
ENSAPLT00000017287
14772375 - 14816129
43755