About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14794690_14797090_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14794690 - 14797090
Intron Length:
2401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
CATTCTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CAGTCTTCAACT
Flanking Amino Acid:
PQKLVLKLRVGFGSFVEKTV
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
72.7
38.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
73.7
0.53
0.8
65.9
35.5
Minor 5ss
33
-1.9
3.1
41.9
44.5
Minor BPS
62.4
0.47
1.6
73.13
43.9

Associated Gene:

Gene:
ITGB1
Ensembl Gene ID:
ENSAPLG00000009293
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046467
14772375 - 14816129
43755