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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147972101_147973147_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147972101 - 147973147
Intron Length:
1047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTGGAT
U12 Branch Point Sequence:
TTTTTTGTAATA
Flanking Amino Acid:
HSFNNFELRIGISHGSVVAG
Intron Amino Acid Position:
1007

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.7
41.3
Major BPS
50.1
0
1.4
51.1
44.3
Major PPT
79.7
0.67
0.9
77.6
35.5
Minor 5ss
38.9
-1.2
2.8
45.8
44.3
Minor BPS
62.4
0.39
2
78
33.3

Associated Gene:

Gene:
ADCY8
Ensembl Gene ID:
ENSAPLG00000005493
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005692
147971518 - 148088075
116558
ENSAPLT00000033206
147971518 - 148088075
116558
ENSAPLT00000020379
147971518 - 148088075
116558