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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147990905_147993490_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147990905 - 147993490
Intron Length:
2586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TTTATTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
LQYDNFNHNGETDFLGTKEA
Intron Amino Acid Position:
808

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
79
35.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
91.7
0.94
0.7
84.7
35.8
Minor 5ss
39.9
-1.1
3.4
54.7
43.6
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
ADCY8
Ensembl Gene ID:
ENSAPLG00000005493
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033206
147971518 - 148088075
116558
ENSAPLT00000020379
147971518 - 148088075
116558
ENSAPLT00000005692
147971518 - 148088075
116558