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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147993664_147995350_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147993664 - 147995350
Intron Length:
1687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTCTG
5'SS Class:
major
3'SS Sequence:
ATTTTCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TAATCACTAAAA
Flanking Amino Acid:
SFADICSYPEYFVFTGVLAM
Intron Amino Acid Position:
751

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.2
43.7
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
88.1
0.86
0.7
86
27.8
Minor 5ss
44
-0.7
2.8
58.7
45.8
Minor BPS
49.2
-0
2
65.64
39.4

Associated Gene:

Gene:
ADCY8
Ensembl Gene ID:
ENSAPLG00000005493
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005692
147971518 - 148088075
116558