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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147993664_147999208_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
147993664 - 147999208
Intron Length:
5545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGCTTC
5'SS Class:
weak_major
3'SS Sequence:
ATTTTCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TAATCACTAAAA
Flanking Amino Acid:
INFLGAIINIYFVFTGVLAM
Intron Amino Acid Position:
720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
67.9
38.2
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
88.1
0.86
0.7
86
27.8
Minor 5ss
53.5
0.12
2.7
73.9
36.5
Minor BPS
49.2
-0
2
65.64
39.4

Associated Gene:

Gene:
ADCY8
Ensembl Gene ID:
ENSAPLG00000005493
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020379
147971518 - 148088075
116558
ENSAPLT00000033206
147971518 - 148088075
116558