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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14799594_14800518_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14799594 - 14800518
Intron Length:
925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGATA
5'SS Class:
strong_major
3'SS Sequence:
TAAATATTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTCCTTTTACT
Flanking Amino Acid:
VTEEFQAVYKELKNLIPKSA
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
81.1
32.6
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
63.7
0.31
1.1
58.2
46
Minor 5ss
35.2
-1.7
3.3
48.1
47.6
Minor BPS
72.7
0.8
1.6
89.79
34

Associated Gene:

Gene:
ITGB1
Ensembl Gene ID:
ENSAPLG00000009293
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018684
14772375 - 14815923
43549
ENSAPLT00000017287
14772375 - 14816129
43755
ENSAPLT00000009794
14772375 - 14809935
37561
ENSAPLT00000046467
14772375 - 14816129
43755