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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147999411_148007409_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147999411 - 148007409
Intron Length:
7999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTTTTCTTATTT
Flanking Amino Acid:
TTIQSLLPSSRVIPMVIQFS
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90.9
0.92
0.6
84.7
30.2
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
69.9
0.7
1.5
84.13
37

Associated Gene:

Gene:
ADCY8
Ensembl Gene ID:
ENSAPLG00000005493
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005692
147971518 - 148088075
116558
ENSAPLT00000033206
147971518 - 148088075
116558
ENSAPLT00000020379
147971518 - 148088075
116558