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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14800609_14801483_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14800609 - 14801483
Intron Length:
875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GCAATCGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
AGTTAGCTAATA
Flanking Amino Acid:
VIQLIIDAYNSLSSEVILEN
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
86
24.8
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
62.6
0.28
1
58.2
42.8
Minor 5ss
43.1
-0.8
3.1
62.8
42
Minor BPS
44.3
-0.4
2.4
60.47
39.3

Associated Gene:

Gene:
ITGB1
Ensembl Gene ID:
ENSAPLG00000009293
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046467
14772375 - 14816129
43755
ENSAPLT00000017287
14772375 - 14816129
43755
ENSAPLT00000009794
14772375 - 14809935
37561