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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148007511_148015797_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148007511 - 148015797
Intron Length:
8287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCTTTTTATT
Flanking Amino Acid:
PFDNIVGKQNYSQMRDEVFK
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
76.2
34.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.8
0.87
0.7
81.4
34.9
Minor 5ss
36
-1.6
3
45.7
42.5
Minor BPS
61.5
0.44
1.6
80.48
35.3

Associated Gene:

Gene:
ADCY8
Ensembl Gene ID:
ENSAPLG00000005493
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033206
147971518 - 148088075
116558
ENSAPLT00000020379
147971518 - 148088075
116558
ENSAPLT00000005692
147971518 - 148088075
116558