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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14801949_14803878_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14801949 - 14803878
Intron Length:
1930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTACCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATGTTCTTACCT
Flanking Amino Acid:
GNGTFECGACRCNEGRIGRL
Intron Amino Acid Position:
711

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
83.6
0.76
0.8
77.4
31
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
68.2
0.65
1.6
81.61
40.3

Associated Gene:

Gene:
ITGB1
Ensembl Gene ID:
ENSAPLG00000009293
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009794
14772375 - 14809935
37561
ENSAPLT00000046467
14772375 - 14816129
43755
ENSAPLT00000018684
14772375 - 14815923
43549
ENSAPLT00000017287
14772375 - 14816129
43755