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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148062605_148087172_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148062605 - 148087172
Intron Length:
24568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTGG
5'SS Class:
major
3'SS Sequence:
TTGTTCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTGTTGTTCATT
Flanking Amino Acid:
PRLAVTSLNQIAAQAVLFMC
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.1
54.3
45.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83.5
0.75
0.8
78.2
34.9
Minor 5ss
35.1
-1.7
3.4
47.5
47.9
Minor BPS
48.6
-0
2.4
74.52
43.3

Associated Gene:

Gene:
ADCY8
Ensembl Gene ID:
ENSAPLG00000005493
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033206
147971518 - 148088075
116558
ENSAPLT00000020379
147971518 - 148088075
116558
ENSAPLT00000005692
147971518 - 148088075
116558