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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14806365_14807595_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14806365 - 14807595
Intron Length:
1231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGCATTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGCTTCTGATTT
Flanking Amino Acid:
QTCLGVCAEHKDCVQCRAFD
Intron Amino Acid Position:
865

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
88.1
25.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
74.3
0.55
0.9
68.2
37.4
Minor 5ss
42
-0.9
2.8
55.1
35.9
Minor BPS
51.2
0.12
1.7
68.88
42.5

Associated Gene:

Gene:
ITGB1
Ensembl Gene ID:
ENSAPLG00000009293
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046467
14772375 - 14816129
43755
ENSAPLT00000018684
14772375 - 14815923
43549
ENSAPLT00000017287
14772375 - 14816129
43755
ENSAPLT00000009794
14772375 - 14809935
37561