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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14809031_14815857_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14809031 - 14815857
Intron Length:
6827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTTAATAAAAT
Flanking Amino Acid:
KEKMNAKWDTGENPIYKSAV
Intron Amino Acid Position:
999

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
72.7
38.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
90.5
0.91
0.6
84.8
30
Minor 5ss
32.5
-2
3.2
40.9
45.3
Minor BPS
47.6
-0.1
2.1
72.72
43.2

Associated Gene:

Gene:
ITGB1
Ensembl Gene ID:
ENSAPLG00000009293
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046467
14772375 - 14816129
43755
ENSAPLT00000018684
14772375 - 14815923
43549
ENSAPLT00000017287
14772375 - 14816129
43755