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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148119391_148120532_F

Intron Information:

Intron Rank:
150796
Intron Class:
major
Intron Phase:
Intron Coordinates:
148119391 - 148120532
Intron Length:
1142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCAAAT
U12 Branch Point Sequence:
CCTTCTCTATTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
64.7
0.37
1.1
69.5
34.1
Major PPT
81.1
0.7
0.8
75.8
32.9
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
46
-0.4
2
50.99
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031027
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024761
148118158 - 148120842
2685