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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148233107_148239491_F

Intron Information:

Intron Rank:
137497
Intron Class:
major
Intron Phase:
Intron Coordinates:
148233107 - 148239491
Intron Length:
6385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTC
5'SS Class:
strong_major
3'SS Sequence:
TATGTCATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
CTTGCTTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
84.7
26.5
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
78.6
0.64
0.9
74.8
39.5
Minor 5ss
44.1
-0.6
2.9
61.1
43.8
Minor BPS
49.7
0.06
2
70.73
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024035
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021125
148217080 - 148239613
22534