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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148233107_148255988_F

Intron Information:

Intron Rank:
137503
Intron Class:
major
Intron Phase:
Intron Coordinates:
148233107 - 148255988
Intron Length:
22882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTTGTAGGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
84.7
26.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
44.1
-0.6
2.9
61.1
43.8
Minor BPS
44.2
-0.3
2.3
67.57
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024035
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034923
148217080 - 148256622
39543