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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148277068_148278613_R

Intron Information:

Intron Rank:
130592
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
148277068 - 148278613
Intron Length:
1546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
TTCTGCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAA
U12 Branch Point Sequence:
TCAATCAGAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
41.2
Major BPS
67.8
0.44
1.1
69.6
37.5
Major PPT
83.1
0.75
0.8
77
31.7
Minor 5ss
62.5
0.42
2.3
72.7
44.5
Minor BPS
43.2
-0.4
1.9
59.08
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017501
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027733
148275997 - 148278717
2721