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Intron Name: Anas_platyrhynchos_platyrhynchos_2_148412643_148415394_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

148412643 - 148415394

Intron Length:

2752

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTATGCCAA

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCTTTATAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTAAA

U12 Branch Point Sequence:

TTTTCTTTATAG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

66.8

40.4

Major BPS

67.6

0.44

1.2

69.9

35.3

Major PPT

88.2

0.86

0.6

24.2

Minor 5ss

43.3

-0.7

2.9

55.6

48.6

Minor BPS

0.3

1.8

72.46

40.4

Associated Gene:

Gene:

EFR3A

Ensembl Gene ID:

ENSAPLG00000004684

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034880

148412520 - 148492836

80317

ENSAPLT00000023261

148412520 - 148491642

79123