Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148415445_148433890_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

148415445 - 148433890

Intron Length:

18446

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTA|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

AATCTCTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

TTGTTCTAAATT

Flanking Amino Acid:

MPARVCCCCAALR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

0.9

86.4

28.9

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

77.3

0.61

0.9

70.5

35.2

Minor 5ss

43.5

-0.7

2.9

62.1

37.1

Minor BPS

68.1

0.65

1.6

82.85

39.2

Associated Gene:

Gene:

EFR3A

Ensembl Gene ID:

ENSAPLG00000004684

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023261

148412520 - 148491642

79123