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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148436573_148445219_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148436573 - 148445219
Intron Length:
8647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GCTTTTTTAACA
Flanking Amino Acid:
PKLQVLGTNSFVKFANIEED
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
72.6
33.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
32.5
-2
2.8
43.1
43.9
Minor BPS
74.2
0.75
1.1
75.16
36.6

Associated Gene:

Gene:
EFR3A
Ensembl Gene ID:
ENSAPLG00000004684
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034880
148412520 - 148492836
80317
ENSAPLT00000023261
148412520 - 148491642
79123
ENSAPLT00000004890
148430161 - 148492836
62676
ENSAPLT00000041403
148415395 - 148491642
76248