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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148449243_148455991_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148449243 - 148455991
Intron Length:
6749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTA
5'SS Class:
major
3'SS Sequence:
CTTATTTCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
TTTGTCTTATTT
Flanking Amino Acid:
FNMQKIEDVDRTGLPSSPTG
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.6
31
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
77.7
0.62
0.9
74.2
35.1
Minor 5ss
49.9
-0
2.4
67.2
43.9
Minor BPS
65.2
0.56
1.7
82.89
39.2

Associated Gene:

Gene:
EFR3A
Ensembl Gene ID:
ENSAPLG00000004684
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034880
148412520 - 148492836
80317
ENSAPLT00000023261
148412520 - 148491642
79123
ENSAPLT00000004890
148430161 - 148492836
62676
ENSAPLT00000041403
148415395 - 148491642
76248