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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148461473_148462383_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148461473 - 148462383
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTTTTT
5'SS Class:
major
3'SS Sequence:
TCTTCTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTCTTTAATA
Flanking Amino Acid:
CFKIIMYSIQAQYSHHVIQE
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
34.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.6
0.67
0.8
77.2
30.1
Minor 5ss
44.8
-0.6
3.2
66.9
44.3
Minor BPS
81.7
0.99
1
82.68
32.7

Associated Gene:

Gene:
EFR3A
Ensembl Gene ID:
ENSAPLG00000004684
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023261
148412520 - 148491642
79123
ENSAPLT00000004890
148430161 - 148492836
62676
ENSAPLT00000041403
148415395 - 148491642
76248
ENSAPLT00000034880
148412520 - 148492836
80317