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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148470751_148471228_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148470751 - 148471228
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATACTT
5'SS Class:
major
3'SS Sequence:
GTTTCCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TTTTCCTGAAAC
Flanking Amino Acid:
HDNRAKLRGIRIIPDVSDLK
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
68.7
42
Major BPS
69.6
0.49
1
59.5
39
Major PPT
82.4
0.73
0.8
77.5
31.2
Minor 5ss
38.4
-1.3
3.3
58.4
45.6
Minor BPS
75.6
0.78
1.5
85.18
32.4

Associated Gene:

Gene:
EFR3A
Ensembl Gene ID:
ENSAPLG00000004684
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034880
148412520 - 148492836
80317
ENSAPLT00000023261
148412520 - 148491642
79123
ENSAPLT00000004890
148430161 - 148492836
62676
ENSAPLT00000041403
148415395 - 148491642
76248