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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148477017_148477532_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148477017 - 148477532
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGTGT
5'SS Class:
major
3'SS Sequence:
TGGCTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CCATTCTTACTA
Flanking Amino Acid:
VPAFCQHVSKVIETRSLEAP
Intron Amino Acid Position:
649

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.2
70.4
42.5
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
82.8
0.74
0.9
80.5
37
Minor 5ss
44
-0.7
3.3
65
46.2
Minor BPS
53.7
0.11
1.6
58.77
41.9

Associated Gene:

Gene:
EFR3A
Ensembl Gene ID:
ENSAPLG00000004684
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034880
148412520 - 148492836
80317
ENSAPLT00000023261
148412520 - 148491642
79123
ENSAPLT00000004890
148430161 - 148492836
62676
ENSAPLT00000041403
148415395 - 148491642
76248