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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148478890_148484501_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148478890 - 148484501
Intron Length:
5612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
GTTTTTTTCATA
Flanking Amino Acid:
LSVPYVPQVTDEDRLSRRKS
Intron Amino Acid Position:
714

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
83.8
0.76
0.7
80.1
32
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
58.8
0.27
1.7
70.9
36

Associated Gene:

Gene:
EFR3A
Ensembl Gene ID:
ENSAPLG00000004684
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034880
148412520 - 148492836
80317
ENSAPLT00000023261
148412520 - 148491642
79123
ENSAPLT00000004890
148430161 - 148492836
62676
ENSAPLT00000041403
148415395 - 148491642
76248