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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14847976_14892466_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14847976 - 14892466
Intron Length:
44491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTACATTGACT
Flanking Amino Acid:
GALQGLPSPKEHHLQRAISA
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.7
0.71
0.8
76.5
37.7
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
71.3
0.75
1.6
89.8
33.8

Associated Gene:

Gene:
EPC1
Ensembl Gene ID:
ENSAPLG00000008897
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028590
14843996 - 14913286
69291