Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148489913_148490689_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

148489913 - 148490689

Intron Length:

777

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGACGA

5'SS Class:

major

3'SS Sequence:

TCTTCTCATGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TATATATTGATT

Flanking Amino Acid:

RLAQILELTIRPPPSPSGTM

Intron Amino Acid Position:

811

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

43.3

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

82.1

0.72

0.8

77.6

Minor 5ss

31.8

-2.1

3.1

40.2

45.3

Minor BPS

54.8

0.23

1.6

73.41

37.2

Associated Gene:

Gene:

EFR3A

Ensembl Gene ID:

ENSAPLG00000004684

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023261

148412520 - 148491642

79123

ENSAPLT00000004890

148430161 - 148492836

62676

ENSAPLT00000041403

148415395 - 148491642

76248

ENSAPLT00000034880

148412520 - 148492836

80317