Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148490785_148492483_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

148490785 - 148492483

Intron Length:

1699

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTGTGTATT

5'SS Class:

major

3'SS Sequence:

ACCTTCTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTCAA

U12 Branch Point Sequence:

ATTCGCAAAACT

Flanking Amino Acid:

PVYEMKFPDLF*

Intron Amino Acid Position:

843

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.7

0.42

74.3

35.2

Major BPS

69.1

0.48

0.9

69.6

26.6

Major PPT

83.2

0.75

0.8

80.5

30.8

Minor 5ss

44.9

-0.5

2.8

65.4

40.1

Minor BPS

46.7

-0.1

2.3

72.94

43.5

Associated Gene:

Gene:

EFR3A

Ensembl Gene ID:

ENSAPLG00000004684

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034880

148412520 - 148492836

80317

ENSAPLT00000004890

148430161 - 148492836

62676