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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148497885_148498469_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148497885 - 148498469
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGGGCT
5'SS Class:
major
3'SS Sequence:
CTGTTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TACTGTTTATTT
Flanking Amino Acid:
GRGYPTDALDRCCFSHHCCM
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
0.9
68.3
36.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.4
0.66
0.8
78.1
35
Minor 5ss
32.5
-2
3.6
47.1
48.5
Minor BPS
49.4
0.03
2
68.17
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004457
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004592
148497009 - 148515376
18368