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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148499430_148499808_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148499430 - 148499808
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTGTAATCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TAATCTTTATAT
Flanking Amino Acid:
AGTSTRMKGKETSPARGVQG
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.16
0.7
89.2
23.6
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
70
0.45
1
59.3
46
Minor 5ss
25.7
-2.8
3.6
34.4
41.2
Minor BPS
60
0.39
1.7
75.49
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004457
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004592
148497009 - 148515376
18368