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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148500004_148503697_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
148500004 - 148503697
Intron Length:
3694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGCAAC
5'SS Class:
major
3'SS Sequence:
ATGGAAATCTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TTACCCTGACCT
Flanking Amino Acid:
TLAATASVEEVFIAPCFCFS
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.2
66.1
39.4
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
44.7
-0.3
1.7
44.8
45
Minor 5ss
42.1
-0.9
2.5
51.9
45
Minor BPS
60
0.39
1.8
79.76
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004457
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004592
148497009 - 148515376
18368