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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148505945_148507220_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148505945 - 148507220
Intron Length:
1276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
CTTGTTTGGATT
Flanking Amino Acid:
VSCSTENLTCETGDPCEQFL
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
77.5
33.3
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
85.4
0.8
0.9
76.9
42.1
Minor 5ss
40.5
-1.1
3.3
52.2
46
Minor BPS
48.6
-0
1.5
65.98
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004457
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004592
148497009 - 148515376
18368