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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148507334_148510187_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148507334 - 148510187
Intron Length:
2854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TTCACTCTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
ATTGTCTGAACT
Flanking Amino Acid:
MEGLPVDEADECCFQHRKCY
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
75.5
40.6
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
72
0.5
1
75.5
33.2
Minor 5ss
41.4
-1
3.1
55.9
42.3
Minor BPS
67.4
0.62
1.5
82.91
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004457
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004592
148497009 - 148515376
18368