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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148510675_148510884_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148510675 - 148510884
Intron Length:
210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGAATG
5'SS Class:
major
3'SS Sequence:
TTTTTTCATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
ELLNTPERILNNATLLNGVF
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
69.2
41.7
Major BPS
100
1.24
0.5
100
0
Major PPT
86
0.81
0.7
86.3
26.9
Minor 5ss
38.4
-1.3
3
46.2
42.8
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004457
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004592
148497009 - 148515376
18368