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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148510951_148515330_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
148510951 - 148515330
Intron Length:
4380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCGAGGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTCTCAAAT
Flanking Amino Acid:
LVSMSMVLHSGGQELEPPIF
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
74.1
36.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
58.5
0.19
1.1
55.3
40.4
Minor 5ss
34.7
-1.7
2.9
41.5
39.2
Minor BPS
64.5
0.53
1.7
81.14
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004457
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004592
148497009 - 148515376
18368